How do I organize my backup files in folders just like my C drive?

I got an external hard drive and used the Vista back-up. Now all my files are in random folders "Backup 1, 2.....55, 56" and I can't find anything. Should I have backed up using the software that came with the drive?

Here is a nice back up program:

http://www.karenware.com/powertools/ptreplicator.asp

run a disk defragmentation. this backs up your file and puts it in order. go on my computer click local disk and right click to mouse and then select sharing and security and then you select tools at the top and choose the defragmentation option.